Four Hour Tutorial   --   UGA -- 2017

intro/
tutorial-overview.ppt			10      Terminology, architecture, Help sources

nav-omics/navigator-intro/
navigator.ppt				40      Intro to Web BioCyc 
					10	Lab
Desktop: Slides 1-41
Web    : Slides 42-76

nav-omics/smarttables/			30	SmartTables
smarttables.ppt				10	Lab

nav-omics/omics-viewers/
overview-omics.pptx			25	Pathway collages, Dashboard
					10	Lab

nav-omics/omics-viewers/
overview-omics.pptx			30	Omics viewers and pathway collages
					10	Lab

Metabolic Route Search			10

Running metabolic models		10


(+ 10 40 10 30 10 25 15 40 15 15 15 )





One Hour Tutorial   --   Stanford -- 2018


nav-omics/navigator-intro/
navigator.ppt				15      Intro to Web BioCyc 

nav-omics/smarttables/			30	SmartTables
smarttables.ppt				

					15	Comparative Analysis



Introduction to the BioCyc Microbial Genomes and Metabolic Pathways Web Portal

BioCyc.org is an extensive and user-friendly genome informatics portal
containing 10,900 microbial genomes.  This one-hour tutorial will show
you how to use several aspects of BioCyc:

1. A basic introduction to BioCyc including database selection,
gene and metabolite searches, and navigating genome-scale metabolic
map diagrams.

2. SmartTables are a facility for storing and analyzing lists of genes
and metabolites.  For example, import a gene list of interest and with
a few clicks convert it to a list of all pathways containing those
genes, a list of all genes that regulate those genes, or a list of all
amino-acid sequences for the gene products.

3. BioCyc contains many comparative operations including a multi-organism
search, comparative genome browser, and extensive ortholog information.