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Querying Flat File Pathway/Genome Databases

In some cases, the flat file versions of a PGDB will be present in your Pathway Tools distribution under the directories for each organism that are in the aic-export/ecocyc directory, such as in directory aic-export/ecocyc/metacyc/released/data/.

However, you can also generate flat file versions of any PGDB by invoking the Pathway/Genome Navigator command Special / Misc / File Export / Dump KB to flat files.

The format of Pathway Tools flat files is described in detail in this Web page. The meaning of the fields in the flat files is described in Pathway Tools User's Guide.