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Installing Pathway Tools Patches

Installing Pathway Tools Patches

This page provides instructions for installing patch files for Pathway Tools software.

Auto-Patch

To automatically install all relevant patches:

  • Select menu command Tools->Instant Patch->Download and Activate All Patches
  • If that causes an error message to appear, you can instead download all the relevant patches from the Internet, using a web browser, such as Firefox or Internet Explorer. The instructions depend on which operating system your BioCyc or Pathway Tools is installed on and which version number (shown as [[VERSION]] below; version is formatted like 7.5) of BioCyc or Pathway Tools you have:
    • Solaris:
      • Download all .lisp files from http://bioinformatics.ai.sri.com/[[VERSION]]/Solaris/patches/ and save them to aic-export/pathway-tools/[[VERSION]]/patches/ .
      • Download all .fasl files from http://bioinformatics.ai.sri.com/[[VERSION]]/Solaris/patches/ and save them to aic-export/pathway-tools/[[VERSION]]/patches/bin-acl-8-1-sparc-solaris/
      • Select menu command Tools->Instant Patch->Activate Installed Patches.
    • Linux:
      • Download all .lisp files from http://bioinformatics.ai.sri.com/[[VERSION]]/Linux/patches/ and save them to aic-export/pathway-tools/[[VERSION]]/patches/ .
      • Download all .fasl files from http://bioinformatics.ai.sri.com/[[VERSION]]/Linux/patches/ and save them to aic-export/pathway-tools/[[VERSION]]/patches/bin-acl-8-1-x86-linux/
      • Select menu command Tools->Instant Patch->Activate Installed Patches.
    • Linux 64 bit:
      • Download all .lisp files from http://bioinformatics.ai.sri.com/[[VERSION]]/Linux-64/patches/ and save them to aic-export/pathway-tools/[[VERSION]]/patches/
      • Download all .fasl files from http://bioinformatics.ai.sri.com/[[VERSION]]/Linux-64/patches/ and save them to aic-export/pathway-tools/[[VERSION]]/patches/bin-acl-8-1-amd64-linux/
      • Select menu command Tools->Instant Patch->Activate Installed Patches.
    • MacOS (x86):
      • Download all .lisp files from http://bioinformatics.ai.sri.com/[[VERSION]]/MacOSX/patches/ and save them to aic-export/pathway-tools/[[version]]/patches/
      • Download all .fasl files from http://bioinformatics.ai.sri.com/[[VERSION]]/MacOSX/patches/ and save them to aic-export/pathway-tools/[[VERSION]]/patches/bin-acl-8-1-x86-macosx/
      • Select menu command Tools->Instant Patch->Activate Installed Patches.
    • MS Windows:
      • Download all .lisp files from http://bioinformatics.ai.sri.com/[[VERSION]]/MSWindows/patches/ and save them to aic-export/pathway-tools/[[version]]/patches/
      • Download all .fasl files from http://bioinformatics.ai.sri.com/[[VERSION]]/MSWindows/patches/ and save them to aic-export/pathway-tools/[[VERSION]]/patches/bin-acl-8-0-x86-mswindows/
      • Select menu command Tools->Instant Patch->Activate Installed Patches.

Patches that We Email You

  • Save the files to:
    • .lisp files (all platforms):
      • aic-export/pathway-tools/[[VERSION]]/patches/
    • .fasl files:
      • (Solaris) aic-export/pathway-tools/[[VERSION]]/patches/bin-acl-8-1-sparc-solaris/
      • (Linux) aic-export/pathway-tools/[[VERSION]]/patches/bin-acl-8-1-x86-linux/
      • (Linux-64) aic-export/pathway-tools/[[VERSION]]/patches/bin-acl-8-1-amd64-linux/
      • (MacOSX) aic-export/pathway-tools/[[VERSION]]/patches/bin-acl-8-1-x86-macosx/
      • (MS Windows) aic-export/pathway-tools/[[VERSION]]/patches/bin-acl-8-0-x86-mswindows
  • Then, select the menu command Tools->Instant Patch->Activate Installed Patches